Watch out for these “Super Spreader” bird species

A new study by researchers at Tufts University describes which species are superspreaders.

When it comes to bird flu, better known as bird flu, not all birds are the same.

“The scientific community has become accustomed to talking about influenza viruses in birds as a group, but birds are an incredibly diverse taxa of animals with diverse natural histories, physiologies and anatomy,” says Jonathan Runstadler, professor and chair of the Division of Infectious Disease & Global Health at Tufts University’s Cummings School of Veterinary Medicine.

Runstadler is one of the authors of a new research study published today (May 19, 2022) in the journal PLOS pathogen, which takes a data-backed look at influenza viruses circulating between different groups of birds and characterizes which bird species are involved in spreading the virus. The timing of this paper is impeccable as a highly pathogenic strain of bird flu has spread across North America.

This lineage of bird flu originated around 1996 and was first found in a domestic goose in China. The virus mutated and persisted, and the first major outbreak of wild birds occurred around 2005 in a large wetland in Central Asia. Subsequent changes in the virus led to its introduction into the US via the Pacific Northwest in 2014, severely impacting the US poultry industry and forcing the culling of about 40 million turkeys and chickens as a control measure.

“It was a huge blow,” says Nichola Hill, the paper’s lead author and an assistant professor of biology at the University of Massachusetts Boston, who worked in Runstadler’s lab at the Cummings School for nearly five years. “Once it was over we knew we were between outbreaks and there was a high probability of another outbreak occurring. We felt we needed to look at long-term, historical data to find patterns and determine which birds are really driving global spread. So we compared birds at a finer taxonomic scale than previous studies like wild ducks, gulls, terrestrial birds and geese with domestic fowl like chickens and we got some really interesting results.”

In the past, ducks, like mallards, were thought to be super-spreaders of avian influenza, infecting wild birds and backyard fowl alike, and Hill and Runstadler’s research found this to be broadly true. Dabbing ducks are powerful vehicles for the spread of the virus and for the evolution of the virus in the wild bird reservoir. They can carry highly pathogenic strains and be completely asymptomatic, in addition they swim and fly to transport the virus in various ways, including into local waters.

But there are other birds that play a bigger role in transmitting the virus. “When we looked at which birds were responsible for spreading to poultry, the signs pointed to wild geese, which are really good at amplifying the virus,” says Hill. “We need to understand why in terms of their host’s pathology, immunity, behavior and ecology.”

One ecological factor that may play a role is that geese are terrestrial and thrive in urban and agricultural settings. Many geese species in North America and Europe are considered pests. “They really are the perfect spillover host because they can take advantage of human-modified habitats,” adds Hill.

Additionally, understanding which birds drive long-distance spread may influence how or when the virus enters a new geographic region. For example, the 2014 outbreak made its way across the Pacific to the United States, likely carried by ducks, but the current outbreak spread across the Atlantic, and ducks may not have been involved to the same extent.

“The first wild bird sightings of 2021 were great black-backed gulls,” says Hill. “Gulls are strong, long-distance pelagic fliers that use tailwinds to travel across the ocean and spread the virus very quickly.”

There has never been an outbreak of avian influenza of this size and scope in North America. About 40 bird species have been infected in the current North American outbreak, including songbirds such as crows and sparrows, and raptors such as owls and hawks. This eruption has a wider geographic range and is affecting a greater diversity of species compared to the 2014 eruption in North America.

“Knowing that gulls, geese and ducks may transmit this virus in different ways goes a long way toward understanding or eventually modeling with more.”[{” attribute=””>accuracy how we expect a virus like this to spread,” says Runstadler. “Ultimately, we could put this data into a model that allows us to predict if there’s a virus emerging, when that virus might enter North America, and what bird populations we might target for surveillance to detect it.”

Clinic Collaboration

Runstadler has been researching avian influenza since 2005, when his lab was located at the University of Alaska Fairbanks and the H5N1 strain of the virus was emerging in East Asia. The scientists in his lab study the ecology of influenza viruses in wild animal hosts, including birds, which are major reservoirs for influenza. Runstadler says most flu viruses are thought to have originated in birds and spread to other hosts.

Runstadler’s lab regularly collaborates with Tufts Wildlife Clinic and director Maureen Murray, clinical associate professor at Cummings School, to gather samples from a variety of birds coming through the clinic, not just the ones showing clinical signs of avian influenza. The goal is twofold: to understand the epidemiology of the virus and manage avian influenza cases safely in the clinic.

“When we admit new birds to the clinic, we sample them to see if they’re carrying the virus and isolate them until we get a negative test to make sure we’re not exposing our other patients to the virus,” says Murray.

The samples are screened at Runstadler’s lab to determine whether a bird is carrying an influenza virus, and if so, whether it’s the H5 strain responsible for outbreaks. Runstadler notes this exercise to gather data now is critical for comparison with data in the future. If a bird tests positive, the sample is sent to the USDA’s National Veterinary Services Laboratory for additional testing and sequencing as a final confirmation.

“We’ve seen some positive birds come through the clinic, including great horned owls, snowy owls, a bald eagle, and a peregrine falcon,” Murray says, “but fortunately, not a lot of cases.”

Risk to Humans

Though avian influenza is zoonotic, the risk to people is very low. Runstadler says there is practically zero threat to the average person going about their daily lives. It is of slightly more risk to people who handle birds regularly, such as wildlife professionals, poultry workers, or backyard chicken owners.

Recently, a man in Colorado was diagnosed with avian influenza, marking the first human case in North America during this outbreak. Media reports indicated he was involved with culling poultry and infected by a sick bird. According to the Centers for Disease Control and Prevention (CDC), he had mild symptoms, was isolated, and recovered. The fact that his symptoms were mild is paradoxically concerning because, Hill notes, it makes the virus harder to detect and track, as infected individuals may ignore mild symptoms and not seek treatment—much like COVID-19.

Murray and the Wildlife Clinic staff wear personal protective equipment when handling birds, which includes gloves, isolation gowns, goggles, and masks. And they have a list of recommendations for the public regarding avian influenza protection.

“If you see a bird that seems to be sick—it can’t stand up, looks off balance, or isn’t aware of its surroundings—we recommend first calling your local animal control officer or a wildlife rehabilitator for assistance,” Murray says. “But if you must handle it yourself, we recommend wearing at minimum a three-ply face mask, or a more protective mask if available, such as an N95. Gloves are also a good idea, but if they’re not available, wash your hands really, really well afterward.”

She adds that people who have birds at home should change their clothes and shoes after touching the sick bird and before going near their own birds.

Hill is not only concerned about human spillover, but with mammalian spillover in general. She points to animals such as dogs, foxes or coyotes that may predate on birds, especially vulnerable ones showing neurological symptoms or in respiratory distress. It’s unclear at this point what the result of those interactions could be, though infections in red foxes have already been reported in the U.S., Canada, and the Netherlands.

Will This Outbreak End?

“The short answer is nobody knows,” Runstadler says, “because we don’t have a sophisticated enough understanding though we hope someday we will. It’s a very complex system.”

The 2014 bird flu incursion gradually fizzled out, but that’s not likely to happen this time, he says, because the 2022 incursion is quite different from the last outbreak. The viruses identified in North America in 2014 contained pieces of the highly pathogenic H5 viruses, but not the whole virus, like this outbreak. Also, this incursion seemingly has spread faster than the last one. In addition, Hill says her research has shown a pattern of the scale and magnitude of bird flu outbreaks increasing over time.

“There’s reason to expect this virus is here to stay, and it’s not going to disappear,” says Runstadler.

Reference: “Ecological divergence of wild birds drives avian influenza spillover and global spread” by Nichola J. Hill, Mary Anne Bishop, Nídia S. Trovão, Katherine M. Ineson, Anne L. Schaefer, Wendy B. Puryear, Katherine Zhou, Alexa D. Foss, Daniel E. Clark, Kenneth G. MacKenzie, Jonathon D. Gass Jr., Laura K. Borkenhagen, Jeffrey S. Hall and Jonathan A. Runstadler, 19 May 2022, PLOS Pathogens.
DOI: 10.1371/journal.ppat.1010062